{ "id": 369272, "title": "How to fix reading image?", "url": "/competitions/rsna-breast-cancer-detection/discussion/369272", "author_name": "MIkhail Donskoy", "post_date": "2022-11-29T14:41:46.844000", "votes": 5, "comment_count": 7, "views": 0, "content": "

When I try to upload an image, I get the following error:

\n
\n

The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. ), pylibjpeg (req. )

\n
\n

Code:
\npydicom.dcmread(f).pixel_array

\n

!pip install -qU python-gdcm pydicom pylibjpeg does not help

", "messages": [ { "id": 2048563, "postDate": "2022-11-29T14:41:46.843Z", "content": "

When I try to upload an image, I get the following error:

\n
\n

The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. ), pylibjpeg (req. )

\n
\n

Code:
\npydicom.dcmread(f).pixel_array

\n

!pip install -qU python-gdcm pydicom pylibjpeg does not help

", "rawMarkdown": "When I try to upload an image, I get the following error:\n> The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. ), pylibjpeg (req. )\n\nCode:\npydicom.dcmread(f).pixel_array\n\n\n!pip install -qU python-gdcm pydicom pylibjpeg does not help", "votes": 5 }, { "id": 2048676, "postDate": "2022-11-29T15:49:13.187Z", "content": "

This worked for me:

\n
pip install -U pylibjpeg pylibjpeg-openjpeg pylibjpeg-libjpeg pydicom\n
\n

You need to restart the kernel after installation though or else you might not be able to read all the images in the train set without error.

", "rawMarkdown": "This worked for me:\n\n```\npip install -U pylibjpeg pylibjpeg-openjpeg pylibjpeg-libjpeg pydicom\n```\n\nYou need to restart the kernel after installation though or else you might not be able to read all the images in the train set without error.", "votes": 3, "replies": [ { "id": 2048726, "postDate": "2022-11-29T16:29:07.203Z", "content": "

Thank you!!

", "rawMarkdown": "Thank you!!", "votes": 1 } ] }, { "id": 2048966, "postDate": "2022-11-29T20:20:19.273Z", "content": "

Had the same question here. As @imvision12 suggested, this worked for me:

\n
!pip install python-gdcm -q\n!pip install pylibjpeg -q\n
", "rawMarkdown": "Had the same question [here](https://www.kaggle.com/competitions/rsna-breast-cancer-detection/discussion/369259). As @imvision12 suggested, this worked for me:\n```\n!pip install python-gdcm -q\n!pip install pylibjpeg -q\n```", "votes": 1 }, { "id": 2048790, "postDate": "2022-11-29T17:19:45.827Z", "content": "

Hey! I had the same problem and did the solution that @radek1 suggested, however internet access is disabled for this competition, so how will that work? I'm still kind of new to Kaggle competitions so sorry if this is a stupid question.

", "rawMarkdown": "Hey! I had the same problem and did the solution that @radek1 suggested, however internet access is disabled for this competition, so how will that work? I'm still kind of new to Kaggle competitions so sorry if this is a stupid question.", "votes": 1, "replies": [ { "id": 2048804, "postDate": "2022-11-29T17:26:22.207Z", "content": "

you have to install these libraries … Here is an example of installing them without the internet (for doing proper submission) (top cells of notebook)
\nhttps://www.kaggle.com/code/selimsef/rsna-csn-segmentor-classifier

", "rawMarkdown": "you have to install these libraries … Here is an example of installing them without the internet (for doing proper submission) (top cells of notebook)\nhttps://www.kaggle.com/code/selimsef/rsna-csn-segmentor-classifier\n", "votes": 4 }, { "id": 2049001, "postDate": "2022-11-29T20:54:19.367Z", "content": "

Hi! pip install -U pylibjpeg pylibjpeg-openjpeg pylibjpeg-libjpeg pydicom and after that rastart kernal

", "rawMarkdown": "Hi! pip install -U pylibjpeg pylibjpeg-openjpeg pylibjpeg-libjpeg pydicom and after that rastart kernal", "votes": 1 }, { "id": 2049304, "postDate": "2022-11-30T03:29:02.323Z", "content": "

Oh alright tysm!

", "rawMarkdown": "Oh alright tysm!" } ] } ], "comments": [ { "id": 2048676, "author_name": "Radek Osmulski", "author_url": "", "post_date": "2022-11-29T15:49:13.187000", "content": "

This worked for me:

\n
pip install -U pylibjpeg pylibjpeg-openjpeg pylibjpeg-libjpeg pydicom\n
\n

You need to restart the kernel after installation though or else you might not be able to read all the images in the train set without error.

", "votes": 3, "replies": [ { "id": 2048726, "author_name": "MIkhail Donskoy", "author_url": "", "post_date": "2022-11-29T16:29:07.203000", "content": "

Thank you!!

", "votes": 1, "replies": [] } ] }, { "id": 2048966, "author_name": "moth", "author_url": "", "post_date": "2022-11-29T20:20:19.273000", "content": "

Had the same question here. As @imvision12 suggested, this worked for me:

\n
!pip install python-gdcm -q\n!pip install pylibjpeg -q\n
", "votes": 1, "replies": [] }, { "id": 2048790, "author_name": "ayaan", "author_url": "", "post_date": "2022-11-29T17:19:45.827000", "content": "

Hey! I had the same problem and did the solution that @radek1 suggested, however internet access is disabled for this competition, so how will that work? I'm still kind of new to Kaggle competitions so sorry if this is a stupid question.

", "votes": 1, "replies": [ { "id": 2048804, "author_name": "DrHB", "author_url": "", "post_date": "2022-11-29T17:26:22.207000", "content": "

you have to install these libraries … Here is an example of installing them without the internet (for doing proper submission) (top cells of notebook)
\nhttps://www.kaggle.com/code/selimsef/rsna-csn-segmentor-classifier

", "votes": 4, "replies": [] }, { "id": 2049001, "author_name": "MIkhail Donskoy", "author_url": "", "post_date": "2022-11-29T20:54:19.367000", "content": "

Hi! pip install -U pylibjpeg pylibjpeg-openjpeg pylibjpeg-libjpeg pydicom and after that rastart kernal

", "votes": 1, "replies": [] }, { "id": 2049304, "author_name": "ayaan", "author_url": "", "post_date": "2022-11-30T03:29:02.323000", "content": "

Oh alright tysm!

", "votes": 0, "replies": [] } ] } ], "raw_markdown_by_id": { "2048563": "When I try to upload an image, I get the following error:\n> The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. ), pylibjpeg (req. )\n\nCode:\npydicom.dcmread(f).pixel_array\n\n\n!pip install -qU python-gdcm pydicom pylibjpeg does not help", "2048676": "This worked for me:\n\n```\npip install -U pylibjpeg pylibjpeg-openjpeg pylibjpeg-libjpeg pydicom\n```\n\nYou need to restart the kernel after installation though or else you might not be able to read all the images in the train set without error.", "2048966": "Had the same question [here](https://www.kaggle.com/competitions/rsna-breast-cancer-detection/discussion/369259). As @imvision12 suggested, this worked for me:\n```\n!pip install python-gdcm -q\n!pip install pylibjpeg -q\n```", "2048790": "Hey! I had the same problem and did the solution that @radek1 suggested, however internet access is disabled for this competition, so how will that work? I'm still kind of new to Kaggle competitions so sorry if this is a stupid question." } }