{
  "id": 344480,
  "title": "Pretrained model for easy segmentation of C1-C7",
  "url": "/competitions/rsna-2022-cervical-spine-fracture-detection/discussion/344480",
  "author_name": "Jay",
  "post_date": "2022-08-15T11:37:52.893000",
  "votes": 14,
  "comment_count": 4,
  "views": 0,
  "content": "<p>I created a tool for automatic segmentation of many organs and bones in CT images. It can also segment vertebrae C1-C7 (each one individually as one class). It is super easy to install and use:</p>\n<p><a href=\"https://github.com/wasserth/TotalSegmentator\" target=\"_blank\">https://github.com/wasserth/TotalSegmentator</a></p>\n<p>It requires the input images to be in nifti format. You can convert the dicoms to nifti with this tool for example: <a href=\"https://github.com/rordenlab/dcm2niix\" target=\"_blank\">https://github.com/rordenlab/dcm2niix</a></p>",
  "messages": [
    {
      "id": 1899597,
      "postDate": "2022-08-15T11:37:52.893Z",
      "content": "<p>I created a tool for automatic segmentation of many organs and bones in CT images. It can also segment vertebrae C1-C7 (each one individually as one class). It is super easy to install and use:</p>\n<p><a href=\"https://github.com/wasserth/TotalSegmentator\" target=\"_blank\">https://github.com/wasserth/TotalSegmentator</a></p>\n<p>It requires the input images to be in nifti format. You can convert the dicoms to nifti with this tool for example: <a href=\"https://github.com/rordenlab/dcm2niix\" target=\"_blank\">https://github.com/rordenlab/dcm2niix</a></p>",
      "rawMarkdown": "I created a tool for automatic segmentation of many organs and bones in CT images. It can also segment vertebrae C1-C7 (each one individually as one class). It is super easy to install and use:\n\nhttps://github.com/wasserth/TotalSegmentator\n\nIt requires the input images to be in nifti format. You can convert the dicoms to nifti with this tool for example: https://github.com/rordenlab/dcm2niix",
      "votes": 14
    },
    {
      "id": 1915006,
      "postDate": "2022-08-26T15:50:59.117Z",
      "content": "<p>I run totalsegmentator to get masks (2019 cases), spending 25 hours.</p>",
      "rawMarkdown": "I run totalsegmentator to get masks (2019 cases), spending 25 hours.",
      "votes": 1
    },
    {
      "id": 1975622,
      "postDate": "2022-10-06T22:53:23.123Z",
      "content": "<p>is there a way to use this tool without internet access in order to use it in the submission?</p>",
      "rawMarkdown": "is there a way to use this tool without internet access in order to use it in the submission?",
      "replies": [
        {
          "id": 1984044,
          "postDate": "2022-10-12T12:20:59.890Z",
          "content": "<p>Even if you could, it will probably be difficult if you only have 9h for the whole inference</p>",
          "rawMarkdown": "Even if you could, it will probably be difficult if you only have 9h for the whole inference"
        }
      ]
    },
    {
      "id": 1975619,
      "postDate": "2022-10-06T22:52:16.813Z",
      "rawMarkdown": "",
      "isDeleted": true
    }
  ],
  "comments": [
    {
      "id": 1915006,
      "author_name": "Shaofeng Yuan",
      "author_url": "",
      "post_date": "2022-08-26T15:50:59.117000",
      "content": "<p>I run totalsegmentator to get masks (2019 cases), spending 25 hours.</p>",
      "votes": 1,
      "replies": []
    },
    {
      "id": 1975622,
      "author_name": "Sebastián Libedinsky",
      "author_url": "",
      "post_date": "2022-10-06T22:53:23.123000",
      "content": "<p>is there a way to use this tool without internet access in order to use it in the submission?</p>",
      "votes": 0,
      "replies": [
        {
          "id": 1984044,
          "author_name": "Victor Salvia",
          "author_url": "",
          "post_date": "2022-10-12T12:20:59.890000",
          "content": "<p>Even if you could, it will probably be difficult if you only have 9h for the whole inference</p>",
          "votes": 0,
          "replies": []
        }
      ]
    },
    {
      "id": 1975619,
      "author_name": "",
      "author_url": "",
      "post_date": "2022-10-06T22:52:16.813000",
      "content": "",
      "votes": 0,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "1899597": "I created a tool for automatic segmentation of many organs and bones in CT images. It can also segment vertebrae C1-C7 (each one individually as one class). It is super easy to install and use:\n\nhttps://github.com/wasserth/TotalSegmentator\n\nIt requires the input images to be in nifti format. You can convert the dicoms to nifti with this tool for example: https://github.com/rordenlab/dcm2niix",
    "1915006": "I run totalsegmentator to get masks (2019 cases), spending 25 hours.",
    "1975622": "is there a way to use this tool without internet access in order to use it in the submission?",
    "1975619": ""
  }
}