{
  "id": 445759,
  "title": "Missing TMA images in train_thumbnails",
  "url": "/competitions/UBC-OCEAN/discussion/445759",
  "author_name": "Rash",
  "post_date": "2023-10-08T16:52:48.977000",
  "votes": 1,
  "comment_count": 3,
  "views": 0,
  "content": "<p>Hello to everyone!</p>\n<p>I've noticed that there is a difference in the number of images in the train_images (538) and thumbnail_images (513) folders. </p>\n<p>The excel with sample information also has 538 rows so I have compared the missing id's and they are the TMA images: '13568', '17637', '21020', '29084', '31594', '35565', '36302', '35565', '35565', '35565', '35565', '35565' and '35565', '35565', '36302', '36583', '36783', '37385', '40864', '4134', '41368', '41586', '42857', '44603', '47035', '48734', '50932', '53655', '57696', '61797', '8280', '91', '9200'</p>\n<p>I had to manually download the 25 images by hand, do you know a way to automate it without downloading all the large images? I would have attached them to you but the limit for attachments is 5Mb.</p>\n<p>I hope it's useful, if it's not an error and I've missed something, let me know.</p>\n<p>Good luck in the competition, the goal is worth it! </p>\n<p>Rashid</p>",
  "messages": [
    {
      "id": 2474035,
      "postDate": "2023-10-08T20:48:34.517Z",
      "content": "<p>The Dataset Description section of the challenge states:</p>\n<blockquote>\n  <p>[train/test]_thumbnails A folder containing smaller .png copies of the whole slide images. Thumbnails are not provided for TMAs.</p>\n</blockquote>\n<p>I believe missing thumbnails for the TMAs is expected.</p>",
      "rawMarkdown": "The Dataset Description section of the challenge states:\n> [train/test]_thumbnails A folder containing smaller .png copies of the whole slide images. Thumbnails are not provided for TMAs.\n\nI believe missing thumbnails for the TMAs is expected.",
      "votes": 2
    },
    {
      "id": 2473919,
      "postDate": "2023-10-08T16:52:48.977Z",
      "content": "<p>Hello to everyone!</p>\n<p>I've noticed that there is a difference in the number of images in the train_images (538) and thumbnail_images (513) folders. </p>\n<p>The excel with sample information also has 538 rows so I have compared the missing id's and they are the TMA images: '13568', '17637', '21020', '29084', '31594', '35565', '36302', '35565', '35565', '35565', '35565', '35565' and '35565', '35565', '36302', '36583', '36783', '37385', '40864', '4134', '41368', '41586', '42857', '44603', '47035', '48734', '50932', '53655', '57696', '61797', '8280', '91', '9200'</p>\n<p>I had to manually download the 25 images by hand, do you know a way to automate it without downloading all the large images? I would have attached them to you but the limit for attachments is 5Mb.</p>\n<p>I hope it's useful, if it's not an error and I've missed something, let me know.</p>\n<p>Good luck in the competition, the goal is worth it! </p>\n<p>Rashid</p>",
      "rawMarkdown": "Hello to everyone!\n\nI've noticed that there is a difference in the number of images in the train_images (538) and thumbnail_images (513) folders. \n\nThe excel with sample information also has 538 rows so I have compared the missing id's and they are the TMA images: '13568', '17637', '21020', '29084', '31594', '35565', '36302', '35565', '35565', '35565', '35565', '35565' and '35565', '35565', '36302', '36583', '36783', '37385', '40864', '4134', '41368', '41586', '42857', '44603', '47035', '48734', '50932', '53655', '57696', '61797', '8280', '91', '9200'\n\nI had to manually download the 25 images by hand, do you know a way to automate it without downloading all the large images? I would have attached them to you but the limit for attachments is 5Mb.\n\nI hope it's useful, if it's not an error and I've missed something, let me know.\n\nGood luck in the competition, the goal is worth it! \n\nRashid",
      "votes": 1
    },
    {
      "id": 2497137,
      "postDate": "2023-10-24T13:29:10.477Z",
      "content": "<p>I extracted them and made a dataset: <a href=\"https://www.kaggle.com/datasets/pt0x0e/ubc-ocean-tma-images\" target=\"_blank\">https://www.kaggle.com/datasets/pt0x0e/ubc-ocean-tma-images</a></p>",
      "rawMarkdown": "I extracted them and made a dataset: https://www.kaggle.com/datasets/pt0x0e/ubc-ocean-tma-images\n"
    },
    {
      "id": 2483348,
      "postDate": "2023-10-15T16:33:39.407Z",
      "content": "<p>I would say it is expected, since the TMA images are \"smaller\" when compared with the other images.</p>",
      "rawMarkdown": "I would say it is expected, since the TMA images are \"smaller\" when compared with the other images."
    }
  ],
  "comments": [
    {
      "id": 2474035,
      "author_name": "Bill Ray",
      "author_url": "",
      "post_date": "2023-10-08T20:48:34.517000",
      "content": "<p>The Dataset Description section of the challenge states:</p>\n<blockquote>\n  <p>[train/test]_thumbnails A folder containing smaller .png copies of the whole slide images. Thumbnails are not provided for TMAs.</p>\n</blockquote>\n<p>I believe missing thumbnails for the TMAs is expected.</p>",
      "votes": 2,
      "replies": []
    },
    {
      "id": 2497137,
      "author_name": "PT0X0E",
      "author_url": "",
      "post_date": "2023-10-24T13:29:10.477000",
      "content": "<p>I extracted them and made a dataset: <a href=\"https://www.kaggle.com/datasets/pt0x0e/ubc-ocean-tma-images\" target=\"_blank\">https://www.kaggle.com/datasets/pt0x0e/ubc-ocean-tma-images</a></p>",
      "votes": 0,
      "replies": []
    },
    {
      "id": 2483348,
      "author_name": "wagnerikeda",
      "author_url": "",
      "post_date": "2023-10-15T16:33:39.407000",
      "content": "<p>I would say it is expected, since the TMA images are \"smaller\" when compared with the other images.</p>",
      "votes": 0,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "2474035": "The Dataset Description section of the challenge states:\n> [train/test]_thumbnails A folder containing smaller .png copies of the whole slide images. Thumbnails are not provided for TMAs.\n\nI believe missing thumbnails for the TMAs is expected.",
    "2473919": "Hello to everyone!\n\nI've noticed that there is a difference in the number of images in the train_images (538) and thumbnail_images (513) folders. \n\nThe excel with sample information also has 538 rows so I have compared the missing id's and they are the TMA images: '13568', '17637', '21020', '29084', '31594', '35565', '36302', '35565', '35565', '35565', '35565', '35565' and '35565', '35565', '36302', '36583', '36783', '37385', '40864', '4134', '41368', '41586', '42857', '44603', '47035', '48734', '50932', '53655', '57696', '61797', '8280', '91', '9200'\n\nI had to manually download the 25 images by hand, do you know a way to automate it without downloading all the large images? I would have attached them to you but the limit for attachments is 5Mb.\n\nI hope it's useful, if it's not an error and I've missed something, let me know.\n\nGood luck in the competition, the goal is worth it! \n\nRashid",
    "2497137": "I extracted them and made a dataset: https://www.kaggle.com/datasets/pt0x0e/ubc-ocean-tma-images\n",
    "2483348": "I would say it is expected, since the TMA images are \"smaller\" when compared with the other images."
  }
}